API Reference

Modules

petab	PEtab global
petab.v1	The PEtab 1.0 subpackage.
petab.v1.C	This file contains constant definitions.
petab.v1.calculate	Functions performing various calculations.
petab.v1.composite_problem	PEtab problems consisting of multiple models
petab.v1.conditions	Functions operating on the PEtab condition table
petab.v1.core	PEtab core functions (or functions that don't fit anywhere else)
petab.v1.distributions	Probability distributions used by PEtab.
petab.v1.lint	Integrity checks and tests for specific features used
petab.v1.math	Functions for parsing and evaluating mathematical expressions.
petab.v1.measurements	Functions operating on the PEtab measurement table
petab.v1.models	Handling of different model types supported by PEtab.
petab.v1.observables	Functions for working with the PEtab observables table
petab.v1.parameter_mapping	Functions related to mapping parameter from model to parameter estimation problem
petab.v1.parameters	Functions operating on the PEtab parameter table
petab.v1.priors	Functions related to prior handling.
petab.v1.problem	PEtab Problem class
petab.v1.sampling	Functions related to parameter sampling
petab.v1.sbml	Functions for interacting with SBML models
petab.v1.simulate	PEtab simulator base class and related functions.
petab.v1.simplify	Functionality for simplifying PEtab problems
petab.v1.visualize	Visualize
petab.v1.yaml	Code regarding the PEtab YAML config files
petab.v2	The PEtab 2.0 subpackage.
petab.v2.C	This file contains constant definitions.
petab.v2.converters	Conversion of PEtab problems.
petab.v2.core	Types around the PEtab object model.
petab.v2.experiments	Functions operating on the PEtab experiments table.
petab.v2.lint	Validation of PEtab problems
petab.v2.models	Handling of different model types supported by PEtab.
petab.v2.petab1to2	Convert PEtab version 1 problems to version 2.