API Reference¶
petab |
PEtab exports |
petab.composite_problem |
PEtab problems consisting of multiple models |
petab.core |
PEtab core functions (or functions that don’t fit anywhere else) |
petab.conditions |
Functions operating on the PEtab condition table |
petab.C |
This file contains constant definitions. |
petab.lint |
Integrity checks and tests for specific features used |
petab.measurements |
Functions operating on the PEtab measurement table |
petab.parameter_mapping |
Functions related to mapping parameter from model to parameter estimation problem |
petab.parameters |
Functions operating on the PEtab parameter table |
petab.problem |
PEtab Problem class |
petab.sampling |
Functions related to parameter sampling |
petab.sbml |
Functions for interacting with SBML models |
petab.yaml |
Code regarding the PEtab YAML config files |
petab.visualize.data_overview |
Functions for creating an overview report of a PEtab problem |
petab.visualize.helper_functions |
This file should contain the functions, which PEtab internally needs for plotting, but which are not meant to be used by non-developers and should hence not be directly visible/usable when using import petab.visualize. |
petab.visualize.plot_data_and_simulation (…) |
Main function for plotting data and simulations. |
petab.visualize.plotting_config |
Plotting config |