petab.visualize.data_overview

Functions for creating an overview report of a PEtab problem

Functions

create_report(problem, model_name) Create an HTML overview data / model overview report
get_data_per_observable(measurement_df) Get table with number of data points per observable and condition
main() Data overview generation with example data from the repository for testing
petab.visualize.data_overview.create_report(problem: petab.problem.Problem, model_name: str) → None

Create an HTML overview data / model overview report

Parameters:
  • problem – PEtab problem
  • model_name – Name of the model, used for file name for report
petab.visualize.data_overview.get_data_per_observable(measurement_df: pandas.core.frame.DataFrame) → pandas.core.frame.DataFrame

Get table with number of data points per observable and condition

Parameters:measurement_df – PEtab measurement data frame
petab.visualize.data_overview.main()

Data overview generation with example data from the repository for testing