PEtab changelog¶

0.0.1¶

Data format:

Update format and documentation with respect to data and parameter scales (#169)
Define YAML schema for grouping PEtab files, also allowing for more complex combinations of files (#183)

Library:

Refactor library. Reorganize petab.core functions.
Fix visualization w/o condition names #142
Extend validator
Removed deprecated functions petab.Problem.get_constant_parameters and petab.sbml.constant_species_to_parameters
Minor fixes and extensions

Data format: No changes

Library:

Extended visualization support
Add helper function and test case to deal with timepoint-specific parameters flatten_timepoint_specific_output_overrides (#128) (Closes #125)
Fix get_noise_distributions: so far we got ‘normal’ everywhere due to wrong grouping (#147)
Fix create_parameter_df: Exclude rule targets (#149)
Verify condition table column names occur as model parameters (Closes #150) (#151)
More informative error messages in case of wrongly set observable and noise parameters (Closes #118) (#155)
Update doc for copasi import and github installation (#158)
Extend validator to check if all required parameters are present in parameter table (Closes #43) (#159)
Setup documentation for RTD (#161)
Handle None in petab.core.split_parameter_replacement_list (Closes #121)
Fix(lint) correct handling of optional columns. Check before access.
Remove obsolete generate_experiment_id.py (Closes #111) #166

See git history